STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23195Hypothetical protein; COG3291 FOG: PKD repeat. (574 aa)    
Predicted Functional Partners:
RAM_23190
Hypothetical protein.
     0.861
RAM_35455
Mycodextranase.
  
     0.695
RAM_33230
Cell surface-attached carbohydrate-binding protein.
  
     0.686
RAM_07455
Hypothetical protein.
 
     0.676
SrfJ
Glucosylceramidase; COG5520 O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
 
     0.650
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
     0.625
RAM_21020
Glycogen debranching enzyme.
  
     0.607
RAM_44460
Hypothetical protein.
 
     0.567
RAM_23185
Hypothetical protein.
 
     0.565
RAM_28370
Hypothetical protein.
  
     0.468
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.