STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23215Hypothetical protein. (204 aa)    
Predicted Functional Partners:
RAM_23210
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
    0.947
RAM_23220
Hypothetical protein.
       0.771
RAM_04610
Hypothetical protein; COG1396 Predicted transcriptional regulators.
 
    0.769
RAM_09130
Hypothetical protein.
 
    0.768
RAM_09140
Hypothetical protein.
 
     0.758
RAM_36455
Hypothetical protein.
 
    0.750
RAM_04600
Hypothetical protein.
 
     0.583
RAM_10170
Hypothetical protein.
 
     0.569
RAM_35225
Wyosine base formation.
  
     0.553
RAM_35235
Oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
  
     0.543
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.