STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23225Hypothetical protein. (162 aa)    
Predicted Functional Partners:
RAM_23230
Hypothetical protein.
       0.645
RAM_35860
Chitosanase; Aids in the defense against invading fungal pathogens by degrading their cell wall chitosan.
  
     0.529
dinB-2
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
     
 0.480
AcpP-5
COG0236 Acyl carrier protein.
  
     0.476
RAM_24900
Esterase; COG0627 Predicted esterase.
 
  
 0.469
RAM_42745
Hypothetical protein.
  
     0.457
RAM_44205
Hypothetical protein; COG0456 Acetyltransferases.
 
    0.429
RAM_01605
Esterase/lipase-like protein; COG0627 Predicted esterase.
 
  
 0.420
RAM_23095
Metallopeptidase; COG0308 Aminopeptidase N.
 
     0.413
RAM_46120
Hypothetical protein.
  
     0.410
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.