STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LacZ-4COG3250 Beta-galactosidase/beta-glucuronidase. (943 aa)    
Predicted Functional Partners:
GalM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.926
GalM-2
Aldose 1-epimerase; COG2017 Galactose mutarotase and related enzymes.
  
 
 0.910
Glk
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
    
 0.903
Glk-2
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
    
 0.903
Glk-3
Glucokinase; COG1940 Transcriptional regulator/sugar kinase.
    
 0.903
SrfJ
Glucosylceramidase; COG5520 O-Glycosyl hydrolase; Belongs to the glycosyl hydrolase 30 family.
  
 
  0.903
GalA-3
COG3345 Alpha-galactosidase.
 
 
 0.827
GalA-9
COG3345 Alpha-galactosidase.
 
 
 0.827
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
    
 0.813
RAM_22540
Xylitol oxidase; COG0277 FAD/FMN-containing dehydrogenases.
    
  0.804
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.