STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23580Hypothetical protein. (245 aa)    
Predicted Functional Partners:
RAM_23575
COG0640 Predicted transcriptional regulators.
 
    0.958
RAM_23570
COG0789 Predicted transcriptional regulators.
       0.639
RAM_24250
COG0236 Acyl carrier protein.
  
     0.513
RAM_31200
Hypothetical protein.
  
     0.486
RAM_23565
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
       0.475
RAM_16970
Hypothetical protein.
  
     0.459
RAM_23940
COG1309 Transcriptional regulator.
  
     0.454
RAM_02895
COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain.
  
     0.448
RAM_18335
Activator of HSP90 ATPase.
  
     0.439
RAM_15425
Hypothetical protein; COG0474 Cation transport ATPase.
  
     0.417
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.