STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23595Oxidoreductase; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases). (307 aa)    
Predicted Functional Partners:
RAM_15650
Oxidoreductase; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
  
     0.704
RAM_23585
Hypothetical protein.
       0.670
RAM_33135
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
 
 0.662
RAM_07335
Hypothetical protein; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
  
     0.601
RAM_23610
Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase.
       0.596
uppP-2
Undecaprenyl pyrophosphate phosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
    0.591
RAM_23590
Lipoprotein.
       0.583
Hmd-3
COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
       0.543
RAM_23745
COG0522 Ribosomal protein S4 and related proteins.
   
   0.413
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.