STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23650Hypothetical protein. (694 aa)    
Predicted Functional Partners:
RAM_23655
COG3537 Putative alpha-1,2-mannosidase.
       0.786
RAM_14190
Hypothetical protein.
  
     0.762
RAM_14185
Hypothetical protein.
  
     0.760
RAM_14180
Membrane protein.
  
     0.755
RAM_09785
COG2964 Uncharacterized protein conserved in bacteria.
  
     0.699
RAM_42395
Lysozyme M1 precursor; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.666
RAM_45910
Integral membrane protein.
  
     0.620
NifU
Nitrogen fixation protein NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
   
    0.614
RAM_01105
Hypothetical protein.
  
    0.602
RAM_26685
Hypothetical protein.
  
     0.591
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.