STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23660COG3537 Putative alpha-1,2-mannosidase. (1424 aa)    
Predicted Functional Partners:
RAM_23665
Feruloyl esterase.
       0.503
RAM_23670
Methyltransferase type 12; COG0500 SAM-dependent methyltransferases.
 
     0.494
RAM_23655
COG3537 Putative alpha-1,2-mannosidase.
 
    
0.480
RAM_23650
Hypothetical protein.
       0.464
RAM_31120
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
   
 0.458
NagZ
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
   
 0.430
RAM_27835
Integral membrane protein.
  
     0.418
RAM_06625
Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.