STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23715COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; Belongs to the ABC transporter superfamily. (581 aa)    
Predicted Functional Partners:
RAM_23710
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.972
RAM_23705
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  
 0.967
RAM_23700
Dipeptide/oligopeptide ABC transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
  
 0.926
RAM_00345
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.901
RAM_45660
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.879
RAM_41235
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.874
RAM_42075
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.869
RAM_41230
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  
 0.847
RAM_41240
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  
 0.847
RAM_42985
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
 0.838
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.