STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23725Hypothetical protein; COG3467 Predicted flavin-nucleotide-binding protein. (133 aa)    
Predicted Functional Partners:
RAM_23730
Muramoyltetrapeptide carboxypeptidase; COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF.
       0.776
RAM_23735
Acyl-peptide hydrolase; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
       0.773
RAM_23750
Aminoglycoside O-phosphotransferase; COG3570 Streptomycin 6-kinase.
 
     0.614
RAM_12710
N5,N10-methylenetetrahydromethanopterin reductase-related protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.577
RAM_23740
Hypothetical protein.
       0.552
RAM_23745
COG0522 Ribosomal protein S4 and related proteins.
       0.552
RAM_34260
Hypothetical protein.
 
     0.481
SsuD
Luciferase-like monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.474
RAM_40660
COG1396 Predicted transcriptional regulators.
  
     0.453
RAM_23755
Hypothetical protein; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
       0.447
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.