STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23730Muramoyltetrapeptide carboxypeptidase; COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF. (299 aa)    
Predicted Functional Partners:
RAM_23735
Acyl-peptide hydrolase; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
       0.840
RAM_23725
Hypothetical protein; COG3467 Predicted flavin-nucleotide-binding protein.
       0.775
DacB
COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
 
  
 0.715
RAM_23695
Peptide/nickel transport system substrate-binding protein; COG2362 D-aminopeptidase.
 
    0.615
RAM_23740
Hypothetical protein.
       0.601
RAM_23745
COG0522 Ribosomal protein S4 and related proteins.
       0.599
AmiA-2
N-acetylmuramoyl-L-alanine amidase; COG3409 Putative peptidoglycan-binding domain-containing protein.
    
 0.561
RAM_23750
Aminoglycoside O-phosphotransferase; COG3570 Streptomycin 6-kinase.
       0.560
RAM_45200
COG3876 Uncharacterized protein conserved in bacteria.
 
     0.463
RAM_23755
Hypothetical protein; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
       0.459
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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