STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23745COG0522 Ribosomal protein S4 and related proteins. (265 aa)    
Predicted Functional Partners:
RAM_23740
Hypothetical protein.
 
    0.970
RAM_30580
Hypothetical protein.
    
 0.945
RAM_23610
Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase.
 
    0.835
RAM_23750
Aminoglycoside O-phosphotransferase; COG3570 Streptomycin 6-kinase.
       0.784
RAM_12725
COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
   
 0.736
RAM_17925
Helicase; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
   
 0.736
RAM_23965
COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
   
 0.736
RAM_47320
COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
   
 0.736
mshB
LmbE family protein; Catalyzes the deacetylation of 1D-myo-inositol 2-acetamido-2- deoxy-alpha-D-glucopyranoside (GlcNAc-Ins) in the mycothiol biosynthesis pathway.
  
     0.710
RAM_11260
Hypothetical protein.
  
  0.681
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.