STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23750Aminoglycoside O-phosphotransferase; COG3570 Streptomycin 6-kinase. (305 aa)    
Predicted Functional Partners:
RAM_23745
COG0522 Ribosomal protein S4 and related proteins.
       0.786
RAM_23740
Hypothetical protein.
       0.780
RAM_02990
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.665
RAM_23755
Hypothetical protein; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
       0.635
RAM_23725
Hypothetical protein; COG3467 Predicted flavin-nucleotide-binding protein.
 
     0.614
RAM_14780
Hypothetical protein; COG3839 ABC-type sugar transport systems, ATPase components.
  
     0.610
RAM_05460
Aminoglycoside O-phosphotransferase; COG3570 Streptomycin 6-kinase.
  
     0.601
RAM_23735
Acyl-peptide hydrolase; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
       0.563
RAM_23730
Muramoyltetrapeptide carboxypeptidase; COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF.
       0.562
RAM_00245
Hypothetical protein.
  
     0.488
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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