STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23755Hypothetical protein; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit. (270 aa)    
Predicted Functional Partners:
RAM_23760
COG1585 Membrane protein implicated in regulation of membrane protease activity.
 
     0.786
RAM_13115
Type III restriction enzyme, res subunit; COG1061 DNA or RNA helicases of superfamily II.
 
     0.754
RAM_00025
Hypothetical protein; COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.654
RAM_46710
Hypothetical protein.
  
   
 0.642
RAM_23750
Aminoglycoside O-phosphotransferase; COG3570 Streptomycin 6-kinase.
       0.635
RAM_23765
Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
     0.635
RAM_23740
Hypothetical protein.
       0.634
RAM_23745
COG0522 Ribosomal protein S4 and related proteins.
       0.634
RAM_10660
Hypothetical protein.
  
     0.626
RAM_23770
Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
     0.617
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.