STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23760COG1585 Membrane protein implicated in regulation of membrane protease activity. (144 aa)    
Predicted Functional Partners:
RAM_23765
Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
  
 0.959
RAM_23770
Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
  
 0.951
RAM_23755
Hypothetical protein; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
 
     0.786
cobS
adenosylcobinamide-GDP ribazoletransferase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.771
CobI
COG2243 Precorrin-2 methylase; Belongs to the precorrin methyltransferase family.
  
    0.744
RAM_28430
Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
  
 0.693
RAM_11790
Band 7 domain-containing protein; COG2268 Uncharacterized protein conserved in bacteria.
  
  
 0.681
RAM_32460
COG2268 Uncharacterized protein conserved in bacteria.
  
  
 0.681
RAM_05465
COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
  
 0.643
RAM_25120
Hypothetical protein.
     
 0.608
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.