STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
RAM_23765Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs. (161 aa)    
Predicted Functional Partners:
RAM_23760
COG1585 Membrane protein implicated in regulation of membrane protease activity.
 
 
 0.966
RAM_28430
Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
  
     0.772
RAM_05465
COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
  
     0.771
RAM_23770
Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
    
0.754
RAM_27170
Peptidase M41; COG0465 ATP-dependent Zn proteases.
  
 0.688
ftsH
Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.688
RAM_23755
Hypothetical protein; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
 
     0.628
arc
COG0464 ATPases of the AAA+ class.
   
 
 0.517
RAM_47855
Hypothetical protein; COG1678 Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
  
    0.509
RAM_05840
Peptidase M16; COG0612 Predicted Zn-dependent peptidases.
  
 0.497
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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