STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23770Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs. (473 aa)    
Predicted Functional Partners:
RAM_23760
COG1585 Membrane protein implicated in regulation of membrane protease activity.
 
  
 0.951
RAM_23765
Band 7 domain-containing protein; COG0330 Membrane protease subunits, stomatin/prohibitin homologs.
 
    
0.755
RAM_27170
Peptidase M41; COG0465 ATP-dependent Zn proteases.
  
 0.730
ftsH
Cell division protease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.730
RAM_23755
Hypothetical protein; COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
 
     0.617
RAM_47855
Hypothetical protein; COG1678 Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
  
    0.528
arc
COG0464 ATPases of the AAA+ class.
   
 
 0.522
RAM_23740
Hypothetical protein.
  
    0.456
RAM_44675
ATPase; COG0464 ATPases of the AAA+ class.
   
 
 0.444
RAM_05840
Peptidase M16; COG0612 Predicted Zn-dependent peptidases.
  
 0.442
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.