STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23780Signal peptide protein. (191 aa)    
Predicted Functional Partners:
RAM_23785
SCP-like extracellular protein; COG2340 Uncharacterized protein with SCP/PR1 domains.
       0.712
RAM_44705
Hypothetical protein.
 
    0.706
RAM_07075
COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.
  
     0.671
RAM_30740
Hypothetical protein.
  
     0.606
RAM_30735
Hypothetical protein.
  
     0.531
RAM_27770
Methyltransferase type 12; COG0500 SAM-dependent methyltransferases.
  
     0.519
Add-3
COG1816 Adenosine deaminase.
       0.495
RAM_24525
Hypothetical protein.
  
     0.494
RAM_27060
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
     0.494
RAM_42250
Alanine rich lipoprotein LppW.
  
     0.476
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.