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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23785SCP-like extracellular protein; COG2340 Uncharacterized protein with SCP/PR1 domains. (164 aa)    
Predicted Functional Partners:
RAM_23780
Signal peptide protein.
       0.712
RAM_06590
Hypothetical protein.
 
    0.666
RAM_08585
Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat.
  
 0.486
Add-3
COG1816 Adenosine deaminase.
  
    0.470
RAM_10830
COG5640 Secreted trypsin-like serine protease.
  
 
 0.428
RAM_19480
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
   
   0.421
RAM_36755
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
   
   0.421
LivM
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
   
   0.409
RAM_07390
Carotenoid cleavage dioxygenase; COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes.
  
  
 0.409
RAM_25740
Hypothetical protein; COG0457 FOG: TPR repeat.
  
   0.409
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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