STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23855Integrase/recombinase; COG0582 Integrase; Belongs to the 'phage' integrase family. (344 aa)    
Predicted Functional Partners:
RAM_23860
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.773
RAM_23865
COG3795 Uncharacterized protein conserved in bacteria.
       0.541
RpoE-33
COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
       0.541
RecQ-3
COG0514 Superfamily II DNA helicase.
  
  
 0.442
RAM_01570
COG0287 Prephenate dehydrogenase.
  
    0.427
whiA
Putative sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
   
    0.411
RAM_40995
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.411
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.410
Apt
COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
   
  
 0.410
RAM_41055
Hypothetical protein.
   
    0.405
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.