STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23875Hypothetical protein. (348 aa)    
Predicted Functional Partners:
FtsX
Cell division transport system permease protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.746
RAM_13360
Hypothetical protein.
   
 
 0.746
RAM_23880
COG0640 Predicted transcriptional regulators.
       0.651
RAM_23885
Activator of HSP90 ATPase.
       0.642
RAM_10220
Peptidase M48; COG0501 Zn-dependent protease with chaperone function.
   
 
 0.619
RAM_44730
Hypothetical protein.
   
 
 0.619
RAM_45565
Hypothetical protein.
   
 
 0.619
RAM_29635
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.511
DnaQ-2
Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
     
 0.478
RAM_00820
Interphotoreceptor retinoid-binding protein; COG0793 Periplasmic protease.
  
  
 0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.