STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23880COG0640 Predicted transcriptional regulators. (105 aa)    
Predicted Functional Partners:
RAM_23885
Activator of HSP90 ATPase.
 
    0.917
RAM_12690
Hypothetical protein.
 
    0.764
RAM_05890
COG0640 Predicted transcriptional regulators.
  
     0.751
RAM_14515
COG0640 Predicted transcriptional regulators.
  
     0.735
RAM_24025
COG0640 Predicted transcriptional regulators.
  
     0.678
RAM_23875
Hypothetical protein.
       0.651
RAM_38985
COG0640 Predicted transcriptional regulators.
 
    0.539
RAM_20870
Activator of HSP90 ATPase.
 
    0.443
RAM_18335
Activator of HSP90 ATPase.
 
    0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.