STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23940COG1309 Transcriptional regulator. (356 aa)    
Predicted Functional Partners:
RAM_23920
DNA gyrase inhibitor.
       0.723
RAM_23925
COG3795 Uncharacterized protein conserved in bacteria.
       0.723
RAM_23930
Hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.723
RpoE-34
COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family.
       0.723
RAM_23945
COG2124 Cytochrome P450.
       0.561
RAM_13835
Hypothetical protein; COG0640 Predicted transcriptional regulators.
  
     0.520
RAM_00105
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
  
     0.501
RAM_34430
Hypothetical protein; COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
  
     0.491
RAM_36955
COG1309 Transcriptional regulator.
  
     0.480
RAM_00135
SARP family transcriptional regulator; COG3903 Predicted ATPase.
  
    0.473
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.