STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23950COG1309 Transcriptional regulator. (258 aa)    
Predicted Functional Partners:
RAM_34130
COG1309 Transcriptional regulator.
  
     0.637
RAM_23960
COG0842 ABC-type multidrug transport system, permease component.
       0.562
RAM_23955
COG1131 ABC-type multidrug transport system, ATPase component.
       0.551
RAM_23965
COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
       0.470
RAM_23970
Hypothetical protein.
       0.470
RAM_06335
COG1309 Transcriptional regulator.
  
     0.454
RAM_14520
Hypothetical protein.
  
     0.421
RAM_01960
Signal transduction protein containing EAL, PAS and GGDEF domain; COG2202 FOG: PAS/PAC domain.
  
 
 0.407
RAM_02995
Signal sensor protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.