STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23960COG0842 ABC-type multidrug transport system, permease component. (260 aa)    
Predicted Functional Partners:
RAM_23955
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.962
RAM_20575
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.841
RAM_10395
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.840
RAM_30410
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.840
RAM_44740
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.840
RAM_39165
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.838
RAM_00125
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.836
RAM_42385
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.777
RAM_27610
COG1131 ABC-type multidrug transport system, ATPase component.
 
  
 0.656
RAM_23970
Hypothetical protein.
       0.648
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.