STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_23970Hypothetical protein. (362 aa)    
Predicted Functional Partners:
RAM_23965
COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
    0.953
RAM_12725
COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
    0.794
RAM_17925
Helicase; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
    0.769
RAM_23960
COG0842 ABC-type multidrug transport system, permease component.
       0.652
RAM_23955
COG1131 ABC-type multidrug transport system, ATPase component.
       0.628
RAM_11265
Hypothetical protein.
  
     0.518
RAM_23950
COG1309 Transcriptional regulator.
       0.470
RAM_11615
Hydrolase; COG4247 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase).
  
     0.407
PhoD-2
COG3540 Phosphodiesterase/alkaline phosphatase D.
  
     0.405
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.