STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
XerCPhage integrase family protein; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (326 aa)    
Predicted Functional Partners:
RAM_41055
Hypothetical protein.
   
    0.748
RAM_01570
COG0287 Prephenate dehydrogenase.
  
    0.674
whiA
Putative sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
    0.672
Apt
COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
  
  
 0.669
RAM_40995
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.665
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.609
RAM_07725
Hypothetical protein.
  
   
 0.566
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
  
 0.513
FtsW-2
COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
  
  
 0.505
AmiA
COG0860 N-acetylmuramoyl-L-alanine amidase.
  
    0.493
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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