STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24040Hypothetical protein. (126 aa)    
Predicted Functional Partners:
RAM_04410
Hypothetical protein.
  
     0.727
RAM_05625
Hypothetical protein.
  
     0.717
RAM_23590
Lipoprotein.
  
     0.691
RAM_08555
Hypothetical protein.
  
     0.656
RAM_24825
Hypothetical protein.
  
     0.650
PspA
COG1842 Phage shock protein A (IM30), suppresses sigma54-dependent transcription.
  
     0.637
RAM_01205
COG1216 Predicted glycosyltransferases.
  
     0.629
RAM_02625
Hypothetical protein.
  
     0.626
RAM_42330
COG3599 Cell division initiation protein.
  
     0.621
GlpQ
COG0584 Glycerophosphoryl diester phosphodiesterase.
       0.613
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.