STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CwlATransglycosylase; COG3409 Putative peptidoglycan-binding domain-containing protein. (202 aa)    
Predicted Functional Partners:
RAM_25300
Hypothetical protein.
  
     0.602
RAM_05035
Hypothetical protein.
  
     0.582
RAM_15330
Phosphoesterase, PA-phosphatase related protein.
 
     0.528
RAM_23020
Hypothetical protein.
  
     0.520
RAM_23025
Hypothetical protein.
  
     0.512
RAM_39520
Hypothetical protein.
  
     0.494
RAM_21380
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.491
RAM_21675
Hypothetical protein.
  
     0.487
RAM_12170
Hypothetical protein.
 
   
 0.484
RAM_13620
Hypothetical protein.
 
     0.478
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (62%) [HD]