STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24095Amidohydrolase; COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold. (531 aa)    
Predicted Functional Partners:
lnt
Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily.
  
    0.764
RAM_24085
Dolichol-phosphate mannosyltransferase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
    0.675
RAM_24080
COG2120 Uncharacterized proteins, LmbE homologs.
       0.571
RAM_47305
FxsA cytoplasmic membrane protein; COG3030 Protein affecting phage T7 exclusion by the F plasmid.
  
  
 0.561
RAM_13970
Integral membrane protein.
 
     0.556
KamA
COG1509 Lysine 2,3-aminomutase.
       0.556
RAM_05105
Hypothetical protein; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
    0.500
SdhD
COG2142 Succinate dehydrogenase, hydrophobic anchor subunit.
  
     0.485
RAM_09915
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
     0.478
RAM_32385
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.474
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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