STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KamACOG1509 Lysine 2,3-aminomutase. (456 aa)    
Predicted Functional Partners:
RAM_35635
Tryptophan 2-monooxygenase; COG1231 Monoamine oxidase.
    
 0.908
RAM_39605
COG1794 Aspartate racemase.
     
  0.900
LysA
COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
     
 0.807
LysA-2
COG0019 Diaminopimelate decarboxylase.
     
 0.807
LysA-3
COG0019 Diaminopimelate decarboxylase.
     
 0.807
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.807
lysA-2
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.807
RAM_18250
PAS domain-containing sensor protein; COG2202 FOG: PAS/PAC domain.
    
   0.668
CheR
COG1352 Methylase of chemotaxis methyl-accepting proteins.
    
   0.668
CheR-2
COG1352 Methylase of chemotaxis methyl-accepting proteins.
    
   0.668
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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