STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24155Lanthionine synthetase; COG4403 Lantibiotic modifying enzyme. (939 aa)    
Predicted Functional Partners:
RAM_24150
COG3335 Transposase and inactivated derivatives.
       0.636
RAM_24160
Hypothetical protein.
       0.596
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.585
RAM_20915
Hypothetical protein.
  
     0.538
RAM_06780
Oxidoreductase; COG3979 Uncharacterized protein contain chitin-binding domain type 3.
  
     0.521
RAM_20855
Cellulose-binding protein.
  
     0.493
RAM_28250
ABC transporter ATPase/permease; COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
   
 0.477
RAM_20040
Hypothetical protein; COG3664 Beta-xylosidase.
  
     0.469
RAM_16485
Methyltransferase; COG0500 SAM-dependent methyltransferases.
  
     0.415
RAM_16480
Terpene synthase.
  
   
 0.410
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.