STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24190COG0069 Glutamate synthase domain 2. (430 aa)    
Predicted Functional Partners:
AsnS
COG0017 Aspartyl/asparaginyl-tRNA synthetases.
 
  
 0.941
RAM_24175
COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).
 
     0.928
RAM_24180
COG4865 Glutamate mutase epsilon subunit.
 
     0.902
GltB
Glutamate synthase (NADPH/NADH) large chain; COG0067 Glutamate synthase domain 1.
 
 
0.887
GltB-2
Glutamate synthase (NADPH/NADH) large chain; COG0067 Glutamate synthase domain 1.
 
 
0.887
GltD
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
 
 0.782
GltD-2
COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases.
 
 
 0.780
RAM_24195
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.773
Fpr-2
ferredoxin--NADP+ reductase; COG1146 Ferredoxin.
  
 
 0.737
FadH
NADPH-dependent 2,4-dienoyl-CoA reductase; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 
 0.734
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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