STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24215COG1960 Acyl-CoA dehydrogenases. (375 aa)    
Predicted Functional Partners:
RAM_20705
COG1960 Acyl-CoA dehydrogenases.
  
  
 
0.911
RAM_24210
FkbH-like protein; COG3882 Predicted enzyme involved in methoxymalonyl-ACP biosynthesis.
 
   
 0.882
FixA
COG2086 Electron transfer flavoprotein, beta subunit.
 
 
 0.783
FixB
COG2025 Electron transfer flavoprotein, alpha subunit.
 
 0.780
RAM_17240
COG1960 Acyl-CoA dehydrogenases.
  
     0.681
RAM_12315
COG1960 Acyl-CoA dehydrogenases.
  
     0.674
RAM_17235
COG1960 Acyl-CoA dehydrogenases.
  
     0.664
PaaH-2
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.651
RAM_13365
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.632
FadB-3
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.632
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.