STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24220XRE family transcriptional regulator; COG3903 Predicted ATPase. (408 aa)    
Predicted Functional Partners:
RAM_21965
SARP family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
 
  
 0.771
RAM_20070
COG3629 DNA-binding transcriptional activator of the SARP family.
 
  
 0.710
RAM_27635
COG3629 DNA-binding transcriptional activator of the SARP family.
 
  
 0.663
RAM_24460
COG3629 DNA-binding transcriptional activator of the SARP family.
 
  
 0.625
RAM_24145
SARP family transcriptional regulator; COG0457 FOG: TPR repeat.
 
  
 0.623
LtaA
COG2008 Threonine aldolase.
       0.620
RAM_20495
SARP family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
 
  
 0.611
RAM_24470
SARP family transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
  
 0.597
RAM_41160
COG3947 Response regulator containing CheY-like receiver and SARP domains.
 
  
 0.582
RAM_33105
COG3629 DNA-binding transcriptional activator of the SARP family.
 
  
 0.567
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.