STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24230Argininosuccinate lyase; COG0439 Biotin carboxylase. (423 aa)    
Predicted Functional Partners:
RAM_03800
acetyl/propionyl-CoA carboxylase, carboxyltransferase subunit; COG0777 Acetyl-CoA carboxylase beta subunit.
 
 
 0.971
ArgH
COG0165 Argininosuccinate lyase.
   
 0.874
RAM_24240
Cystathionine beta-synthase/cysteine synthase; COG0031 Cysteine synthase.
 
 
 0.869
RAM_24245
COG3208 Predicted thioesterase involved in non-ribosomal peptide biosynthesis.
 
     0.813
RAM_24260
COG3321 Polyketide synthase modules and related proteins.
  
  
 0.789
RAM_24250
COG0236 Acyl carrier protein.
     
 0.784
PaaH-2
COG1250 3-hydroxyacyl-CoA dehydrogenase.
     
 0.753
RAM_24265
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.734
RAM_24285
Kinase; COG4542 Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase.
 
   
 0.728
RAM_36280
COG1985 Pyrimidine reductase, riboflavin biosynthesis.
   
   0.680
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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