STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24300Methyltransferase type 12; COG0500 SAM-dependent methyltransferases. (341 aa)    
Predicted Functional Partners:
RAM_24305
Aminotransferase; COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs.
       0.773
RAM_27570
Hypothetical protein; COG3510 Cephalosporin hydroxylase.
 
     0.748
RAM_24140
Hypothetical protein.
  
     0.697
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.662
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.662
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.662
RAM_20460
COG3629 DNA-binding transcriptional activator of the SARP family.
  
     0.642
RAM_29815
Hypothetical protein; COG5635 Predicted NTPase (NACHT family).
  
     0.593
RAM_31450
Hypothetical protein.
  
     0.548
RAM_24295
N-carbamoyl-L-amino-acid hydrolase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
       0.529
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.