STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24340COG2421 Predicted acetamidase/formamidase. (301 aa)    
Predicted Functional Partners:
RAM_24335
Hypothetical protein.
  
    0.701
RAM_24320
FAD-dependent oxidoreductase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.674
RAM_24325
X-Pro dipeptidyl-peptidase; COG2936 Predicted acyl esterases.
       0.674
RAM_24330
Hypothetical protein.
       0.674
MgtC
MgtC-like protein; COG1285 Uncharacterized membrane protein.
  
    0.564
RAM_19480
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
     
 0.516
RAM_36755
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
     
 0.516
RAM_24315
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.477
RAM_10105
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
 
     0.465
RAM_28180
COG0405 Gamma-glutamyltransferase.
 
     0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.