STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24345Hypothetical protein. (630 aa)    
Predicted Functional Partners:
RAM_10775
Hypothetical protein; COG2368 Aromatic ring hydroxylase.
  
     0.606
RAM_15635
Hypothetical protein; COG3408 Glycogen debranching enzyme.
  
     0.570
RAM_41850
Methylamine utilization protein MauE.
  
     0.550
RAM_25455
Hypothetical protein.
  
     0.508
RAM_17945
Hypothetical protein.
  
  
 0.501
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
    0.487
RAM_24350
Hypothetical protein.
       0.486
RAM_22055
Hypothetical protein.
  
 
   0.473
RAM_26945
LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.449
RAM_07120
Carbohydrate-binding protein; COG2730 Endoglucanase.
 
     0.441
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.