STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24365Racemase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (393 aa)    
Predicted Functional Partners:
RAM_20150
COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.683
RAM_25835
Muconate lactonizing enzyme/L-Ala-D,L-Glu epimerase/mandelate racemase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.660
RAM_25825
Mandelate racemase/muconate lactonizing enzyme; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.628
RAM_24370
COG2186 Transcriptional regulators.
 
     0.615
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
   
 0.563
RAM_16750
Hypothetical protein.
 
     0.553
RAM_20145
COG1175 ABC-type sugar transport systems, permease components.
 
     0.545
RAM_15690
Amidohydrolase; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
   
 0.495
RAM_09350
Amidohydrolase; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
   
 0.481
RAM_20155
COG2186 Transcriptional regulators.
 
     0.442
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.