STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24395ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component. (395 aa)    
Predicted Functional Partners:
RAM_24380
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.905
RAM_24375
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.836
RAM_16000
COG1175 ABC-type sugar transport systems, permease components.
  
 
 0.678
RAM_17985
Hypothetical protein.
  
     0.608
RAM_05495
COG1175 ABC-type sugar transport systems, permease components.
  
 
 0.586
RAM_33830
COG1309 Transcriptional regulator.
  
     0.584
RAM_38475
COG0395 ABC-type sugar transport system, permease component.
 
 
 0.576
RAM_20040
Hypothetical protein; COG3664 Beta-xylosidase.
 
     0.573
RAM_38480
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.566
RAM_20855
Cellulose-binding protein.
  
    0.550
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.