STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocd-4COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog. (348 aa)    
Predicted Functional Partners:
CysK-4
COG0031 Cysteine synthase.
 
  
 0.894
CysK-3
COG0031 Cysteine synthase.
 
  
 0.719
CysK-2
COG0031 Cysteine synthase.
 
  
 0.586
RAM_24405
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.548
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.517
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.517
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.517
MbtH-4
MbtH protein; COG3251 Uncharacterized protein conserved in bacteria.
       0.493
Ocd-2
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
  
   
 0.491
RAM_24420
COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).
       0.491
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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