STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24430COG1794 Aspartate racemase. (234 aa)    
Predicted Functional Partners:
RAM_39605
COG1794 Aspartate racemase.
  
  
  0.974
aspA
COG1027 Aspartate ammonia-lyase.
   
 0.937
AnsA
COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D.
 
  
 0.936
pyrB
COG0540 Aspartate carbamoyltransferase, catalytic chain; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
    
 0.914
AsnB
COG0367 Asparagine synthase (glutamine-hydrolyzing).
    
 0.911
AsnB-2
COG0367 Asparagine synthase (glutamine-hydrolyzing).
    
 0.911
AsnB-3
COG0367 Asparagine synthase (glutamine-hydrolyzing).
    
 0.911
AsnB-4
COG0367 Asparagine synthase (glutamine-hydrolyzing).
    
 0.909
NadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.904
argG
COG0137 Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
     
  0.900
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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