STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24450Hypothetical protein; COG0439 Biotin carboxylase. (402 aa)    
Predicted Functional Partners:
RAM_03800
acetyl/propionyl-CoA carboxylase, carboxyltransferase subunit; COG0777 Acetyl-CoA carboxylase beta subunit.
  
 
 0.945
RAM_24440
Lantibiotic dehydratase.
       0.779
RAM_24445
COG0477 Permeases of the major facilitator superfamily.
       0.773
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.747
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.747
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.747
RAM_36280
COG1985 Pyrimidine reductase, riboflavin biosynthesis.
   
   0.746
RAM_24435
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.737
RAM_24425
COG4865 Glutamate mutase epsilon subunit.
       0.585
RAM_24420
COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).
       0.575
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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