STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24460COG3629 DNA-binding transcriptional activator of the SARP family. (372 aa)    
Predicted Functional Partners:
RAM_24455
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
       0.773
RAM_24220
XRE family transcriptional regulator; COG3903 Predicted ATPase.
 
  
 0.625
RAM_29585
ATPase; COG3903 Predicted ATPase.
 
    0.599
RAM_27795
COG1396 Predicted transcriptional regulators.
  
  
 0.556
RAM_16835
Hypothetical protein.
  
     0.546
RAM_38375
Hypothetical protein.
  
     0.504
RAM_16900
LuxR family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
  
 0.479
RAM_07255
roadblock/LC7 family protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
  
     0.465
RAM_16830
COG0642 Signal transduction histidine kinase.
  
     0.460
RAM_32825
Hypothetical protein.
  
     0.451
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.