STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AbfA-10alpha-N-arabinofuranosidase. (483 aa)    
Predicted Functional Partners:
XynA-6
Glycosyl hydrolase/beta-1,4-xylanase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
   0.863
XynA-3
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
   0.852
XynA-2
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
   0.847
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
   
 0.814
RAM_20315
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
 
   0.801
RAM_16765
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
 
   0.800
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.793
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.793
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.793
RAM_19035
Esterase/lipase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
   0.778
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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