STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24525Hypothetical protein. (343 aa)    
Predicted Functional Partners:
RAM_05995
COG1141 Ferredoxin.
  
     0.753
RAM_21380
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.671
RAM_23025
Hypothetical protein.
  
     0.660
RAM_23020
Hypothetical protein.
  
     0.636
RAM_41715
SARP family transcriptional regulator fused with ATPase domain; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
    0.624
RAM_26315
Hypothetical protein.
  
     0.621
RAM_17545
Hypothetical protein; COG2133 Glucose/sorbosone dehydrogenases.
 
    0.614
RAM_30735
Hypothetical protein.
  
    0.599
RAM_24530
COG2124 Cytochrome P450.
 
   0.585
RAM_41710
SARP family transcriptional regulator fused with ATPase domain; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
    0.584
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.