STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24640Hypothetical protein. (146 aa)    
Predicted Functional Partners:
RAM_24635
Hypothetical protein.
 
     0.960
RAM_24645
Phage tail protein.
 
    0.959
RAM_24650
COG3497 Phage tail sheath protein FI.
 
  
 0.935
RAM_24600
COG3628 Phage baseplate assembly protein W.
 
   
 0.872
RAM_24665
ATPase; COG0464 ATPases of the AAA+ class.
 
   
 0.845
RAM_24620
Phage tail protein.
 
    0.844
RAM_24615
COG1652 Uncharacterized protein containing LysM domain.
 
    0.843
RAM_24610
Rhs element Vgr protein; COG3500 Phage protein D.
 
     0.839
RAM_24670
Hypothetical protein.
 
     0.831
RAM_24575
Hypothetical protein; COG0372 Citrate synthase.
 
   
 0.823
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.