STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24690Hypothetical protein; COG0402 Cytosine deaminase and related metal-dependent hydrolases. (471 aa)    
Predicted Functional Partners:
GltA
COG0372 Citrate synthase.
 
     0.853
PcaR-2
COG1414 Transcriptional regulator.
 
     0.755
RAM_24685
Hypothetical protein.
       0.737
CatA
Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
     0.621
RAM_24700
COG1804 Predicted acyl-CoA transferases/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
     0.466
Qor-13
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
    0.430
AmpC-3
COG2367 Beta-lactamase class A.
 
    0.406
RAM_30720
COG1454 Alcohol dehydrogenase, class IV.
 
 
   0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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