STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_24805X-Pro dipeptidase; COG0006 Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family. (380 aa)    
Predicted Functional Partners:
Lrp-5
COG1522 Transcriptional regulators.
   
 
 0.867
RAM_24790
Hypothetical protein.
       0.637
RAM_24795
Hypothetical protein.
       0.637
RAM_24810
COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
  
  
 0.523
KorA
COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
     
 0.501
RAM_05200
F420-0--gamma-glutamyl ligase.
 
  
 0.440
pheT
phenylalanyl-tRNA synthetase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.436
RAM_10865
CMP/dCMP deaminase zinc-binding protein; COG2131 Deoxycytidylate deaminase.
  
  
 0.428
PepN
COG0308 Aminopeptidase N.
  
 
 0.416
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.